PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00326.1.p
Common NameMIMGU_mgv1a021836mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 198aa    MW: 20160 Da    PI: 6.516
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00326.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.69.1e-5919114297
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfedyv+plkvyl+kyre+e
  Migut.O00326.1.p  19 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIE 111
                       89******************************************************************************************* PP

             NF-YB  95 gek 97 
                       gek
  Migut.O00326.1.p 112 GEK 114
                       *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.8E-5413122IPR009072Histone-fold
SuperFamilySSF471131.46E-4021119IPR009072Histone-fold
PfamPF008086.5E-282488IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.5E-205270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.5E-207189No hitNo description
PRINTSPR006151.5E-2090108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MADSDNDSGG HSNSNASSRE QDRFLPIANV SRIMKKALPA NAKISKDAKE TVQECVSEFI  60
SFVTGEASDK CQREKRKTIN GDDLLWAMTT LGFEDYVDPL KVYLAKYREI EGEKTSVSAV  120
KDAAGGGSAV TSGGGGYNGG GIYGGGGPVM GYHHGGQMYG GGGFQHIGGG GNLDTTGSSG  180
SYGGGSGGGG ATTGRQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4919109292Transcription factor HapC (Eurofung)
4g92_B1e-4919109292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880402e-74AB288040.1 Oryza sativa Japonica Group OsHAP3I gene for HAP3 subunit of HAP complex, complete cds.
GenBankAC1205292e-74AC120529.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0039N21, complete sequence.
GenBankAK0602252e-74AK060225.1 Oryza sativa Japonica Group cDNA clone:001-002-G06, full insert sequence.
GenBankAP0149592e-74AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829444.11e-141PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233101e-77NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A022PN771e-141A0A022PN77_ERYGU; Uncharacterized protein
STRINGVIT_19s0015g00440.t011e-80(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.17e-68nuclear factor Y, subunit B3